BioinformaticsPlus > 3D-SPECS > GDB9948A

BLAST against:

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IDENTIFIERS: GDB9948A | WDR1 | gi|9257257 | GeneID=9948 | Length=606 | TM=0
DESCRIPTION: WD repeat-containing protein 1 isoform 1 [Homo sapiens].
MGC STATUS: YES [BC002489:AU7-A1 SeqId=100.0 Overlap=100.0 QR=1-606/606 MR=1-606/606];
YES [BC000201:AU11-C12 SeqId=99.8 Overlap=100.0 QR=1-606/606 MR=1-606/606];
PARTIAL [BC030541:AT50-G11 SeqId=99.8 Overlap=69.6 QR=185-606/606 MR=45-466/466]

Pfam Domain Diagram

Domain Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
PFAM IDENTIFIER
(Click to display all human targets with this domain type)
PFAM
WEBSITE
(External Link)
MATCH
E-VALUE
(OVERLAP)
PDB
STATUS
GDB9948A gi|9257257 1 179 217 PF00400:WD40 PFAM 2e-06
(100.0%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1PEV_A SeqId=51.3 QR=1-39/39 QOV=100.0 MR=180-218/611 MOV=6.4]
GDB9948A gi|9257257 2 231 262 PF00400:WD40 PFAM 1e-05
(82.1%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1PEV_A SeqId=54.8 QR=2-32/32 QOV=96.9 MR=237-267/611 MOV=5.1]
GDB9948A gi|9257257 3 310 350 PF00400:WD40 PFAM 2e-04
(100.0%)
No match above 50 percent sequence identity
GDB9948A gi|9257257 4 527 559 PF00400:WD40 PFAM 3e-05
(84.6%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1PEV_A SeqId=51.7 QR=5-33/33 QOV=87.9 MR=535-563/611 MOV=4.7]

Crystallisation Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
XTALPRED
CLASS
PDB TEMPLATE CONFIDENCE TOP PDB MATCH
GDB9948A gi|9257257 1 3 606 1 1NR0A0 CERT No match above 50 percent sequence identity

Crystallisation Class Key

1 Optimal
2 Suboptimal
3 Average
4 Difficult
5 Very difficult