BioinformaticsPlus > 3D-SPECS > GDB116987A

BLAST against:

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IDENTIFIERS: GDB116987A | AGAP1 | gi|80978930 | GeneID=116987 | Length=857 | TM=0
DESCRIPTION: centaurin, gamma 2 isoform 1 [Homo sapiens].
MGC STATUS: PARTIAL [BC060814:AT64-H9 SeqId=99.4 Overlap=41.1 QR=1-352/857 MR=1-352/392]

Pfam Domain Diagram

Domain Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
PFAM IDENTIFIER
(Click to display all human targets with this domain type)
PFAM
WEBSITE
(External Link)
MATCH
E-VALUE
(OVERLAP)
PDB
STATUS
GDB116987A gi|80978930 1 73 180 PF08477:Miro PFAM 6e-23
(99.1%)
PDB80-95:QOV>=50:MOV>=50
[gnl|PDB_ATOM|3IHW_A SeqId=87.0 QR=1-108/108 QOV=100.0 MR=22-129/184 MOV=58.7]
GDB116987A gi|80978930 2 548 587 PF00169:PH PFAM 5e-04
(39.6%)
PDB80-95:QOV>=50:MOV<50
[gnl|PDB_ATOM|2RLO_A SeqId=80.0 QR=1-40/40 QOV=100.0 MR=84-123/128 MOV=31.2]
GDB116987A gi|80978930 3 611 727 PF01412:ArfGap PFAM 1e-37
(96.7%)
No match above 50 percent sequence identity
GDB116987A gi|80978930 4 768 799 PF00023:Ank PFAM 1e-06
(97.0%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1N0R_A SeqId=50.0 QR=1-32/32 QOV=100.0 MR=1-32/126 MOV=25.4]

Crystallisation Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
XTALPRED
CLASS
PDB TEMPLATE CONFIDENCE TOP PDB MATCH
GDB116987A gi|80978930 1 1 63 5 N/A N/A No match above 50 percent sequence identity
GDB116987A gi|80978930 2 64 238 1 2IWRA0 CERT PDB80-95:QOV>=50:MOV>=50
[gnl|PDB_SEQRES|3IHW_A SeqId=88.6 QR=7-172/175 QOV=94.9 MR=19-184/184 MOV=90.2]
GDB116987A gi|80978930 3 344 422 5 2RLOA0 PDB50-80:BLAST PDB50-80:QOV>=50:MOV>=50
[gnl|PDB_ATOM|2RLO_A SeqId=75.9 QR=1-79/79 QOV=100.0 MR=1-79/128 MOV=61.7]
GDB116987A gi|80978930 4 540 592 5 2RLOA0 PDB50-80:BLAST PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|2RLO_A SeqId=79.2 QR=1-53/53 QOV=100.0 MR=78-128/128 MOV=39.8]
GDB116987A gi|80978930 5 611 727 4 N/A N/A No match above 50 percent sequence identity
GDB116987A gi|80978930 6 728 857 3 N/A N/A No match above 50 percent sequence identity

Crystallisation Class Key

1 Optimal
2 Suboptimal
3 Average
4 Difficult
5 Very difficult