BioinformaticsPlus > 3D-SPECS > GDB1939A

BLAST against:

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IDENTIFIERS: GDB1939A | LGTN | gi|56699485 | GeneID=1939 | Length=584 | TM=0
DESCRIPTION: ligatin [Homo sapiens].
MGC STATUS: YES [BC058905:AT81-D1 SeqId=100.0 Overlap=100.0 QR=1-584/584 MR=1-584/584];
YES [BC039134:AT68-A9 SeqId=100.0 Overlap=100.0 QR=1-584/584 MR=1-584/584];
YES [BC001585:AT36-E6 SeqId=100.0 Overlap=100.0 QR=1-584/584 MR=1-584/584]

Pfam Domain Diagram

Domain Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
PFAM IDENTIFIER
(Click to display all human targets with this domain type)
PFAM
WEBSITE
(External Link)
MATCH
E-VALUE
(OVERLAP)
PDB
STATUS
GDB1939A gi|56699485 1 104 156 PF01472:PUA PFAM 0.003
(66.2%)
No match above 50 percent sequence identity
GDB1939A gi|56699485 2 490 569 PF01253:SUI1 PFAM 8e-09
(93.7%)
No match above 50 percent sequence identity

Crystallisation Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
XTALPRED
CLASS
PDB TEMPLATE CONFIDENCE TOP PDB MATCH
GDB1939A gi|56699485 1 14 181 1 3D79A0 CERT No match above 50 percent sequence identity
GDB1939A gi|56699485 2 241 443 4 N/A N/A No match above 50 percent sequence identity
GDB1939A gi|56699485 3 444 574 4 2OGHA0 CERT No match above 50 percent sequence identity

Crystallisation Class Key

1 Optimal
2 Suboptimal
3 Average
4 Difficult
5 Very difficult