BioinformaticsPlus > 3D-SPECS > GDB4854A

BLAST against:

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IDENTIFIERS: GDB4854A | NOTCH3 | gi|134244285 | GeneID=4854 | Length=2321 | TM=0
DESCRIPTION: Notch homolog 3 [Homo sapiens].
MGC STATUS: NO

Pfam Domain Diagram

Domain Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
PFAM IDENTIFIER
(Click to display all human targets with this domain type)
PFAM
WEBSITE
(External Link)
MATCH
E-VALUE
(OVERLAP)
PDB
STATUS
GDB4854A gi|134244285 1 162 194 PF00008:EGF PFAM 0.001
(100.0%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|2VJ3_A SeqId=63.3 QR=4-33/33 QOV=90.9 MR=12-41/135 MOV=22.2]
GDB4854A gi|134244285 2 274 307 PF07645:EGF_CA PFAM 0.001
(81.0%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|2VJ3_A SeqId=52.9 QR=1-34/34 QOV=100.0 MR=4-37/135 MOV=25.2]
GDB4854A gi|134244285 3 391 424 PF07645:EGF_CA PFAM 0.002
(81.0%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|2VJ3_A SeqId=76.5 QR=1-34/34 QOV=100.0 MR=4-37/135 MOV=25.2]
GDB4854A gi|134244285 4 1171 1202 PF00008:EGF PFAM 0.003
(97.0%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|3H5C_B SeqId=59.3 QR=6-32/32 QOV=84.4 MR=13-39/317 MOV=8.5]
GDB4854A gi|134244285 5 1382 1418 PF00066:Notch PFAM 1e-07
(100.0%)
No match above 50 percent sequence identity
GDB4854A gi|134244285 6 1423 1459 PF00066:Notch PFAM 8e-07
(100.0%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|3L95_Y SeqId=50.0 QR=1-37/37 QOV=100.0 MR=40-77/244 MOV=15.6]
GDB4854A gi|134244285 7 1472 1500 PF00066:Notch PFAM 2e-06
(78.4%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|2OO4_B SeqId=79.3 QR=1-29/29 QOV=100.0 MR=85-113/234 MOV=12.4]
GDB4854A gi|134244285 8 1505 1559 PF06816:NOD PFAM 8e-21
(96.5%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|3L95_Y SeqId=54.5 QR=1-55/55 QOV=100.0 MR=121-175/244 MOV=22.5]
GDB4854A gi|134244285 9 1576 1640 PF07684:NODP PFAM 3e-18
(100.0%)
No match above 50 percent sequence identity
GDB4854A gi|134244285 10 1839 1870 PF00023:Ank PFAM 9e-06
(97.0%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1YYH_B SeqId=78.1 QR=1-32/32 QOV=100.0 MR=57-88/253 MOV=12.6]
GDB4854A gi|134244285 11 1939 1969 PF00023:Ank PFAM 0.002
(93.9%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1OT8_C SeqId=67.7 QR=1-31/31 QOV=100.0 MR=151-181/239 MOV=13.0]
GDB4854A gi|134244285 12 1973 2003 PF00023:Ank PFAM 0.004
(93.9%)
PDB80-95:QOV>=50:MOV<50
[gnl|PDB_ATOM|2QC9_B SeqId=90.3 QR=1-31/31 QOV=100.0 MR=156-186/210 MOV=14.8]
GDB4854A gi|134244285 13 2176 2318 PF09770:PAT1 PFAM 2e-04
(20.2%)
No match above 50 percent sequence identity

Crystallisation Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
XTALPRED
CLASS
PDB TEMPLATE CONFIDENCE TOP PDB MATCH
GDB4854A gi|134244285 1 42 157 5 2VJ3A0 CERT No match above 50 percent sequence identity
GDB4854A gi|134244285 2 157 276 5 2VJ3A0 CERT No match above 50 percent sequence identity
GDB4854A gi|134244285 3 308 390 5 N/A N/A No match above 50 percent sequence identity
GDB4854A gi|134244285 4 390 509 5 2VJ3A0 CERT PDB50-80:QOV>=50:MOV>=50
[gnl|PDB_SEQRES|2VJ3_A SeqId=66.4 QR=1-119/120 QOV=99.2 MR=3-121/135 MOV=88.1]
GDB4854A gi|134244285 5 506 547 5 1APOA0 CERT No match above 50 percent sequence identity
GDB4854A gi|134244285 6 603 1237 5 1N8YC0 CERT No match above 50 percent sequence identity
GDB4854A gi|134244285 7 1238 1386 5 N/A N/A No match above 50 percent sequence identity
GDB4854A gi|134244285 8 1384 1571 5 3I08C0 PDB50-80:BLAST PDB50-80:QOV>=50:MOV>=50
[gnl|PDB_ATOM|3L95_Y SeqId=53.3 QR=4-182/188 QOV=95.2 MR=4-181/244 MOV=73.0]
GDB4854A gi|134244285 9 1576 1640 5 N/A N/A No match above 50 percent sequence identity
GDB4854A gi|134244285 10 1817 2025 1 1OT8A0 CERT PDB80-95:QOV>=50:MOV>=50
[gnl|PDB_ATOM|2F8Y_A SeqId=80.7 QR=3-209/209 QOV=99.0 MR=1-207/215 MOV=96.3]

Crystallisation Class Key

1 Optimal
2 Suboptimal
3 Average
4 Difficult
5 Very difficult