BioinformaticsPlus > 3D-SPECS > GDB5670A

BLAST against:

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IDENTIFIERS: GDB5670A | PSG2 | gi|156616282 | GeneID=5670 | Length=335 | TM=0
DESCRIPTION: pregnancy specific beta-1-glycoprotein 2 [Homo sapiens].
MGC STATUS: YES [BC022316:AU87-G8 SeqId=99.7 Overlap=100.0 QR=1-335/335 MR=1-335/335]

Pfam Domain Diagram

Domain Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
PFAM IDENTIFIER
(Click to display all human targets with this domain type)
PFAM
WEBSITE
(External Link)
MATCH
E-VALUE
(OVERLAP)
PDB
STATUS
GDB5670A gi|156616282 1 35 133 PF07686:V-set PFAM 3e-10
(91.3%)
PDB50-80:QOV>=50:MOV>=50
[gnl|PDB_ATOM|2DKS_A SeqId=62.0 QR=1-92/99 QOV=92.9 MR=10-101/130 MOV=70.8]
GDB5670A gi|156616282 2 156 234 PF07679:I-set PFAM 2e-05
(92.2%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1E07_A SeqId=57.1 QR=3-79/79 QOV=97.5 MR=478-554/642 MOV=12.0]
GDB5670A gi|156616282 3 254 318 PF07679:I-set PFAM 9e-05
(84.4%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1E07_A SeqId=60.0 QR=1-65/65 QOV=100.0 MR=218-282/642 MOV=10.1]

Crystallisation Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
XTALPRED
CLASS
PDB TEMPLATE CONFIDENCE TOP PDB MATCH
GDB5670A gi|156616282 1 30 322 1 2RIKA0 CERT PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|1E07_A SeqId=55.9 QR=6-293/293 QOV=98.3 MR=1-286/642 MOV=44.5]

Crystallisation Class Key

1 Optimal
2 Suboptimal
3 Average
4 Difficult
5 Very difficult