BioinformaticsPlus > 3D-SPECS > GDB89849A

BLAST against:

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IDENTIFIERS: GDB89849A | ATG16L2 | gi|55743108 | GeneID=89849 | Length=619 | TM=0
DESCRIPTION: ATG16 autophagy related 16-like 2 [Homo sapiens].
MGC STATUS: NO

Pfam Domain Diagram

Domain Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
PFAM IDENTIFIER
(Click to display all human targets with this domain type)
PFAM
WEBSITE
(External Link)
MATCH
E-VALUE
(OVERLAP)
PDB
STATUS
GDB89849A gi|55743108 1 14 207 PF08614:ATG16 PFAM 8e-17
(99.5%)
No match above 50 percent sequence identity
GDB89849A gi|55743108 2 331 364 PF00400:WD40 PFAM 5e-06
(87.2%)
PDB50-80:QOV>=50:MOV<50
[gnl|PDB_ATOM|2XYI_A SeqId=50.0 QR=2-34/34 QOV=97.1 MR=273-306/430 MOV=7.9]
GDB89849A gi|55743108 3 417 450 PF00400:WD40 PFAM 0.001
(87.2%)
No match above 50 percent sequence identity
GDB89849A gi|55743108 4 502 530 PF00400:WD40 PFAM 0.002
(74.4%)
No match above 50 percent sequence identity

Crystallisation Information

3D-SPECS
ID
GENBANK
GI
INDEX START
RESIDUE
STOP
RESIDUE
XTALPRED
CLASS
PDB TEMPLATE CONFIDENCE TOP PDB MATCH
GDB89849A gi|55743108 1 325 619 1 3EMHA0 CERT No match above 50 percent sequence identity

Crystallisation Class Key

1 Optimal
2 Suboptimal
3 Average
4 Difficult
5 Very difficult