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ID: GDB375189A_40786418

RPS-BLAST 2.2.19 [Nov-02-2008]

Database: Pfam.v23 
           10,340 sequences; 1,940,249 total letters

Searching..................................................done

Query= GDB375189A_40786418
         (129 letters)





                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|CDD|109299 pfam00235, Profilin, Profilin.                          71   3e-14
gnl|CDD|117730 pfam09176, Mpt_N, Methylene-tetrahydromethanopter...    33   0.005
gnl|CDD|117117 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-...    26   0.79 

>gnl|CDD|109299 pfam00235, Profilin, Profilin. 
          Length = 122

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 5   QSLLLDTLLGTKHVDSAALIKIQERSLCVASPGFNVTPS-DVRTLVNGFAKNPLQARREG 63
           Q+ + + L+GT  V  AA++   + ++  AS GF  T   ++  +  GF  NP      G
Sbjct: 3   QAYVDNLLMGTGKVQGAAIVGY-DGNVWAASAGFTFTKIGEIANIAAGF-DNPAGFFSNG 60

Query: 64  LYFKGKDYRCVRAD-EYSLYAKNENTGVVVVKTHLYLLVATYTEGMYPSICVEATESLGD 122
           +   G+ Y  +R D + S+Y K    GVV+VKT   L++  Y E + P    +  E L D
Sbjct: 61  ITLGGQKYMVIRDDADRSIYGKKGAGGVVIVKTGQALVIGHYKETVQPGQANKVVEKLAD 120

Query: 123 YL 124
           YL
Sbjct: 121 YL 122


>gnl|CDD|117730 pfam09176, Mpt_N, Methylene-tetrahydromethanopterin
          dehydrogenase, N-terminal.  Members of this family
          adopt a alpha-beta structure, with a core comprising
          three alpha/beta/alpha layers, in which each sheet
          contains four strands. They are predominantly found in
          prokaryotic methylene-tetrahydromethanopterin
          dehydrogenase, which catalyses the dehydrogenation of
          methylene-tetrahydromethanopterin and the reversible
          dehydrogenation of methylene-H(4)F.
          Length = 81

 Score = 33.4 bits (77), Expect = 0.005
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 39 NVTPSDVRTLVNG--FAKNPLQARREGLYFKGKD 70
          NVTP +V  LV    F++ P   +R  ++  G+D
Sbjct: 20 NVTPEEVTGLVQDAIFSRGPKDLKRTAIFIGGRD 53


>gnl|CDD|117117 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A
           synthase C terminal. 
          Length = 282

 Score = 26.2 bits (58), Expect = 0.79
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 40  VTPSDVRTLVNGFAKNPLQARREGLYFKGKDYRCVRADEYSLYAKNENTGVVVV------ 93
           V  S  R L N F +N    +  G+Y K + +  ++ ++ S   ++     + +      
Sbjct: 83  VQKSLARLLYNDFLRNASSDKGNGVYEKLEAFGGLKLED-SYTDRDLEKAFMQLSKPLFK 141

Query: 94  -KTHLYLLVATYTEGMY 109
            KT   LLV T    MY
Sbjct: 142 KKTKPSLLVPTQVGNMY 158


  Database: Pfam.v23
    Posted date:  Mar 31, 2009  6:13 PM
  Number of letters in database: 1,940,249
  Number of sequences in database:  10,340
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0747    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 10340
Number of Hits to DB: 1,054,631
Number of extensions: 86258
Number of successful extensions: 56
Number of sequences better than  1.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 129
Length of database: 1,940,249
Length adjustment: 75
Effective length of query: 54
Effective length of database: 1,164,749
Effective search space: 62896446
Effective search space used: 62896446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)